SNP Profiles of NA 168 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
1._GC-01-112-6-09	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
2._NA_168	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
3._GC-01-112-6-09	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
4._NA_168	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
5._NA_168	_	AG	CC	TT	_	AA	TT	_	CC	_	AA	GG	CC	AG
6._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
7._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
8._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
9._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
10._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
11._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
12._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
13._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
14._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
15._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
16._GC-01-112-6-09	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG
17._NA_168	CC	AA	CG	TT	TT	AA	TT	TT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC
1._GC-01-112-6-09	CT	AA	GG	CT	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC
2._NA_168	CT	AA	GG	CT	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC
3._GC-01-112-6-09	CT	AA	GG	CT	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC
4._NA_168	CT	AA	GG	CT	CT	CG	GG	AA	CC	AC	GG	GT	CT	CC
5._NA_168	TT	AA	GG	CC	CC	GG	GG	AA	CC	AA	GG	GT	TT	CC
6._NA_168	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
7._GC-01-112-6-09	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
8._GC-01-112-6-09	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
9._GC-01-112-6-09	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
10._GC-01-112-6-09	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
11._GC-01-112-6-09	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
12._NA_168	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
13._NA_168	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
14._NA_168	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
15._NA_168	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
16._GC-01-112-6-09	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC
17._NA_168	TT	AT	GG	CT	CT	CC	GG	AA	CC	AA	GG	GT	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	AA	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
1._GC-01-112-6-09	AG	GG	AA	CC	AA	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
2._NA_168	AG	GG	AA	CC	AA	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
3._GC-01-112-6-09	AG	GG	AA	CC	AA	_	AA	_	GG	AC	AT	GG	X_X	X_X
4._NA_168	AG	GG	AA	CC	AA	_	AA	_	GG	AC	AT	GG	X_X	X_X
5._NA_168	AG	GG	AA	CC	AA	_	AC	CC	GG	AA	AT	GG	X_X	X_X
6._NA_168	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
7._GC-01-112-6-09	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
8._GC-01-112-6-09	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
9._GC-01-112-6-09	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
10._GC-01-112-6-09	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
11._GC-01-112-6-09	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
12._NA_168	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
13._NA_168	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
14._NA_168	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
15._NA_168	AG	GG	AT	CT	AG	CC	AA	CT	GG	AC	TT	GG	X_X	X_X
16._GC-01-112-6-09	AG	GG	AT	CT	AG	CC	AA	_	GG	AC	TT	GG	X_X	X_X
17._NA_168	AG	GG	AT	CT	AG	CC	AA	_	GG	AC	TT	GG	X_X	X_X

Input profile: NA_168

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 435

Dapeng Zhang, 2016

1._NA_168 GC-01-112-6-09

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

2._NA_168

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

3._NA_168 GC-01-112-6-09

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._NA_168

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._NA_168

84.3 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F493 T5

Dapeng Zhang, 2016

6._NA_168

78.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 4 > FP

Dapeng Zhang, 2016

7._NA_168 GC-01-112-6-09

78.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

8._NA_168 GC-01-112-6-09

78.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

9._NA_168 GC-01-112-6-09

78.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

10._NA_168 GC-01-112-6-09

78.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

11._NA_168 GC-01-112-6-09

78.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._NA_168

78.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 10

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._NA_168

78.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 12

Dapeng Zhang, 2016

14._NA_168

78.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 1 > FP

Dapeng Zhang, 2016

15._NA_168

78.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 6 > FP

Dapeng Zhang, 2016

16._NA_168 GC-01-112-6-09

78.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

17._NA_168

78.2 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1609 3 > FP

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25